Yeah I agree that Lionel began to change when he switched bodies with Clark. It re-awakened him to the feeling of being truly good again inside.
At that point, I'm sure Lionel was pretty sure that Clark was the Traveler, after realizing all of the powers that Clark had. It's a convenience that shortly thereafter Jor-El took control of the situation and changed Lionel's perspective as to what to do with Clark- for I'm sure that Lionel would have exposed him or used him for his own purposes sooner or later if Jor-El hadn't changed his intentions with Clark from using/exposing him to protecting him as a father figure.
At that point, I'm sure Lionel was pretty sure that Clark was the Traveler, after realizing all of the powers that Clark had. It's a convenience that shortly thereafter Jor-El took control of the situation and changed Lionel's perspective as to what to do with Clark- for I'm sure that Lionel would have exposed him or used him for his own purposes sooner or later if Jor-El hadn't changed his intentions with Clark from using/exposing him to protecting him as a father figure.
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