I thought the comment referred to the fact that Clark was helping the Kandorians which Chloe doesn't like as Alia killed her in the future, hence why Chloe wanted to put them to the PZ. Chloe wasn't happy about helping them when one of them kills her in the future.
I think that's why Chloe said to Clark at the end that now Alia can't kill her in the future.
I think that's why Chloe said to Clark at the end that now Alia can't kill her in the future.
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