Have to see what actually happens when Arthur Petrelli steals abilities on the cellular level. I guess could think of it in terms of The Haitian. The Haitian takes memories, but can't give them back. Later it's discovered that cellular damage occurs and can be reversed/healed which results in memories returning.
In the case of stealing abilities: Arthur may actually damage, disable, or cut off access to the ability-gene. BTnG is able to enable or activate a connection again *maybe some biochemical re-routing*, but not a complete planned activation.
Perhaps an older/more experienced/focused Matt Parkman Junior could completely re-enable Hiro and Peter's powers. Hell, probably could cure cancer one day.
In the case of stealing abilities: Arthur may actually damage, disable, or cut off access to the ability-gene. BTnG is able to enable or activate a connection again *maybe some biochemical re-routing*, but not a complete planned activation.
Perhaps an older/more experienced/focused Matt Parkman Junior could completely re-enable Hiro and Peter's powers. Hell, probably could cure cancer one day.
As someone mentioned earlier, Arthur could have been lying about nothing being left. Sort of a way to discourage any attempts in hopes of willing the power back. Depend on what actually happens when powers are stolen. And for all extensive purposes, Arthur truly did believe nothing was left.
Another way at looking for reasons why the powers aren't fully restored is activating powers through artificial *non-natural means* just isn't as good as the original, maybe it'll just take longer.
One thing that is left about the power, is the memory of that ability in the brain/body. Which in the case of the formula the brain/body may push to try and heal/regain what it once had. Hiro's case, already explained my theory on the whole amateur rewiring job.
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